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Sample GSM2796264 Query DataSets for GSM2796264
Status Public on Sep 29, 2017
Title Cordblood_highpregnancyanxiety_PELS_11
Sample type genomic
 
Source name Cordblood_high pregnancy anxiety
Organism Homo sapiens
Characteristics gender: Female
pregnancy anxiety: high pregnancy anxiety
tissue: cord blood
Extracted molecule genomic DNA
Extraction protocol Cord blood DNA isolation
Label Cy3, Cy5
Label protocol Standard HM450 BeadChip protocol on bisulfite treated DNA
 
Hybridization protocol Standard HM450 BeadChip protocol on bisulfite treated DNA
Scan protocol Standard HM450 BeadChip protocol on bisulfite treated DNA
Data processing Raw data quality control and normalization were implemented using the wateRmelon package in R (Bioconductor). Probes with a detection p-value of more than 0.01 or a bead count of less than 3 in more than 5% of samples were removed. Additionally, cross-hybridizing probes, SNP probes and probes on the X or Y chromosomes were removed.
The singal_intensities.txt contains unmethylated and methylated signal intensities.
 
Submission date Sep 28, 2017
Last update date Jan 23, 2018
Contact name Stephan Claes
Organization name KU Leuven
Department Department of Neurosciences
Lab Research Group Psychiatry
Street address Herestraat 49
City Leuven
ZIP/Postal code 3000
Country Belgium
 
Platform ID GPL13534
Series (1)
GSE104376 HM450 analysis pregnancy anxiety

Data table header descriptions
ID_REF
VALUE Quantile normalized (wateRmelon package) Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.588461781 0
cg00000108 0.89581923 0
cg00000109 0.779187751 0
cg00000165 0.173978667 0
cg00000236 0.758300727 0
cg00000289 0.512112721 0
cg00000292 0.802045173 0
cg00000321 0.25641575 0
cg00000363 0.292704922 0
cg00000622 0.032995565 0
cg00000658 0.769703969 0
cg00000714 0.260220753 0
cg00000721 0.829350067 0
cg00000734 0.081394027 0
cg00000769 0.084378865 0
cg00000807 0.79881072 0
cg00000884 0.764359391 0
cg00000905 0.100873658 0
cg00000924 0.517808533 0
cg00000948 0.792922484 0

Total number of rows: 414733

Table truncated, full table size 10087 Kbytes.




Supplementary file Size Download File type/resource
GSM2796264_10006823060_R06C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM2796264_10006823060_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Raw data provided as supplementary file
Processed data included within Sample table
Raw data are available on Series record

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