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Sample GSM2787979 Query DataSets for GSM2787979
Status Public on Sep 01, 2018
Title AKAP12KO-Rep1
Sample type SRA
 
Source name AKAP12KO, liver
Organism Mus musculus
Characteristics strain: C57BL/6
developmental stage: adult
genotype: AKAP12 null
tissue: liver
Extracted molecule total RNA
Extraction protocol liver was removed, snap frozen in liquid nitrogen, RNA was isolated using Trizol Reagent
RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina MiSeq
 
Data processing Illumina Casava1.7 software used for basecalling
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm10 whole genome using STAR v2.5.2b
Raw counts were calculated using featureCounts from Subread package v1.5.1
Genome_build: mm10
Supplementary_files_format_and_content: Tab-delimited text files include raw counts for each sample
 
Submission date Sep 20, 2017
Last update date May 15, 2019
Contact name Hye Shin Lee
E-mail(s) siny78@snu.ac.kr
Phone 82-2-880-9180
Organization name Seoul National University
Department College of pharmacy
Street address 1Gwanakro
City Seoul
ZIP/Postal code 08826
Country South Korea
 
Platform ID GPL16417
Series (1)
GSE104030 Transcriptome profiling of liver samples from WT and AKAP12 KO mice after inducing fibrosis resolution
Relations
BioSample SAMN07673602
SRA SRX3200243

Supplementary file Size Download File type/resource
GSM2787979_AKAP12KO-Rep1.txt.gz 124.9 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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