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Sample GSM2787564 Query DataSets for GSM2787564
Status Public on Feb 01, 2018
Title Het-mStromal-SVF-FSK
Sample type SRA
Source name Primary SVF cells from bone stromal cells
Organism Mus musculus
Characteristics genotype: CRTC2-/- CRTC3-/+ mice
tissue: Primary bone marrow stromal SVF cells
treatment: 2 hours FSK treatment
Extracted molecule polyA RNA
Extraction protocol total RNA extracted with Qiagen Rneasy kit
polyA RNA isolated and library prepared with NEBnext Ultra kit
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina MiSeq
Description q4
Data processing MiSeq Generation of fastq files
tophat2 alignment
cuffdiff alignment
Genome_build: mm10
Supplementary_files_format_and_content: .diff file from cuffdiff comparing all four samples
Submission date Sep 19, 2017
Last update date May 15, 2019
Contact name Ezra Wiater
Phone (858)453-4100
Organization name Salk Institute For Biological Studies
Department PBL
Lab Montminy
Street address 10010 N Torrey Pines Rd
City San Diego
State/province CA
ZIP/Postal code 92037
Country USA
Platform ID GPL16417
Series (1)
GSE103999 CREB Coactivators CRTC2 and CRTC3 Modulate Bone Marrow Hematopoiesis
BioSample SAMN07666117
SRA SRX3197471

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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