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GEO accession:
Sample GSM272651
Query DataSets for GSM272651
Status
Public on May 01, 2008
Title
S2 and KC cells
Sample type
SRA
Source name
Drosophila melanogaster S2 and KC cell
Organism
Drosophila melanogaster
Characteristics
mix of 4 populations:
1. S2 cells
2. S2 cells treated with ecdysone for 48 hrs.
3. KC cells
4. KC cells treated with ecdysone for 48 hrs.
Extracted molecule
total RNA
Extraction protocol
total RNA from S2 and KC cell, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH
Library strategy
OTHER
Library source
transcriptomic
Library selection
other
Instrument model
Illumina Genome Analyzer
Description
small RNAs
Data processing
raw sequences were clipped by 3' linker sequences recognition, and select clipped sequences longer than 18 nt
Submission date
Mar 11, 2008
Last update date
May 15, 2019
Contact name
Wei-Jen Chung
Phone
212-6395549
Organization name
Sloan-Kettering Institute
Department
Developmental Biology
Lab
Lai
Street address
430 E 67th St
City
New York
State/province
NY
ZIP/Postal code
10021
Country
USA
Platform ID
GPL9058
Series (2)
GSE10794
Drosophila melanogaster small RNA sequence: cell lines and imaginal disc
GSE11624
Drosophila melanogaster small RNA sequence from 14 libraries
Relations
SRA
SRX029066
BioSample
SAMN00116359
Data table header descriptions
SEQUENCE
COUNT
number of times small RNA was sequenced
Data table
SEQUENCE
COUNT
CTAAAATTCTCCTCACCCTC
1
ACGGACTGAGGGGATTTAAGC
1
TAAGAGCCTCAAACACTTTG
1
TGTTTGTGGAGGGTGGTTTCA
1
TGTCACTCGCCAGATGGGCGG
1
CAGACCATAGAGGGGTATGCTCT
1
CCCCTCTCCGTGTGATTGTA
1
CCTTCGATGGGTAGAAGGCT
1
GTTGTGTCGATATTTTCTCCTCG
1
AGTAAGGTTTACTAAGGCTTCC
1
TATGTGATGTCAACGTGTTCA
1
AAATATGACGCGATTGATTGCAA
1
TGTTAATGCTGGTGCTGGTGCT
2
ACCCGCTGCTGAGGATTGTG
2
CCTGAATATCCTTTCGGCGGG
1
CGTAGTTGAACTTGTGCTTCAT
2
TGTCCAATGCCACTGCTATGGCTGGGGGGGGCGTCA
1
AGTGGACTGCTTGGTGGG
1
CCAGCCTAACGTAGGGGTT
2
TGCGAAAGATTCAGGATACC
1
Total number of rows:
207158
Table truncated, full table size
5027 Kbytes
.
Supplementary data files not provided
SRA Run Selector
Raw data are available in SRA
Processed data included within Sample table
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