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Sample GSM2711578 Query DataSets for GSM2711578
Status Public on Oct 15, 2020
Title BM2_liver_14d
Sample type SRA
 
Source name liver
Organism Mus musculus
Characteristics strain: BLAB/c
tissue: liver
Treatment protocol The mice were challenged percutaneously with 40 ± 1 Schistosoma japonicum cercariae.
Extracted molecule total RNA
Extraction protocol RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model HiSeq X Ten
 
Data processing Illumina Casava software used for basecalling.
Sequenced reads were trimmed for adaptor sequence and removed low-quality bases, then were mapped to mouse genome mm10. Gene expression levels were estimated by the RSEM algorithm.
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include the expression values of UCSC known genes.
 
Submission date Jul 19, 2017
Last update date Oct 08, 2020
Contact name hong li
E-mail(s) lihong01@sibs.ac.cn
Organization name SIBS
Street address 320 Yueyang Road
City Shanghai
ZIP/Postal code 200031
Country China
 
Platform ID GPL21273
Series (1)
GSE101656 Mice liver RNA-Seq during Schistosoma japonicum infection
Relations
BioSample SAMN07370834
SRA SRX3020654

Supplementary file Size Download File type/resource
GSM2711578_BM2-liver-14d.rsem.genes.results.txt.gz 1.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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