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Sample GSM2711575 Query DataSets for GSM2711575
Status Public on Oct 15, 2020
Title BM1_liver_7d
Sample type SRA
Source name liver
Organism Mus musculus
Characteristics strain: BLAB/c
tissue: liver
Treatment protocol The mice were challenged percutaneously with 40 ± 1 Schistosoma japonicum cercariae.
Extracted molecule total RNA
Extraction protocol RNA libraries were prepared for sequencing using standard Illumina protocols
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model HiSeq X Ten
Data processing Illumina Casava software used for basecalling.
Sequenced reads were trimmed for adaptor sequence and removed low-quality bases, then were mapped to mouse genome mm10. Gene expression levels were estimated by the RSEM algorithm.
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include the expression values of UCSC known genes.
Submission date Jul 19, 2017
Last update date Oct 08, 2020
Contact name hong li
Organization name SIBS
Street address 320 Yueyang Road
City Shanghai
ZIP/Postal code 200031
Country China
Platform ID GPL21273
Series (1)
GSE101656 Mice liver RNA-Seq during Schistosoma japonicum infection
BioSample SAMN07370837
SRA SRX3020651

Supplementary file Size Download File type/resource
GSM2711575_BM1-liver-7d.rsem.genes.results.txt.gz 1.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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