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Sample GSM269783 Query DataSets for GSM269783
Status Public on Feb 20, 2009
Title UIP, biological rep20
Sample type RNA
 
Source name Lung tissue with usual interstitial pneumonia (UIP), biological rep20
Organism Homo sapiens
Characteristics Tissue from a patient with pathological diagnosis of usual interstitial pneumonia.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA followed by RNeasy cleanup was performed according to the manufacturers' instructions.
Label Cy3
Label protocol Cy3 labeled cRNA were prepared according to the standard Agilent protocol from 500ng total RNA.
 
Hybridization protocol Following fragmentation, 1.5 ug of cRNA were hybridized for 17 hr at 65C on Agilent 4x44k Whole Human Genome Array. Arrays were washed according to the manufacturer's protocol.
Scan protocol Agilent Scanner protocol
Description Lung tissue samples obtained from the University of Pittsburgh Health Sciences Tissue Bank. Gene expression data from a lung with usual interstitial pneumonia.
Data processing Agilent Feature Extraction
 
Submission date Feb 28, 2008
Last update date Mar 26, 2008
Contact name Kazuhisa Konishi
E-mail(s) konishi.kazuhisa@med.osaka-cu.ac.jp
Phone 412-647-3156
Organization name University of Pittsburgh
Department Pulmonry, Allergy, and Critical Care Medicine
Lab Kaminski Lab
Street address 1212 Kaufmann Building 3471 Fifth Ave
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platform ID GPL4133
Series (1)
GSE10667 MMP1 and MMP7 as potential peripheral blood biomarkers in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE gProcessedSignal

Data table
ID_REF VALUE
12 616.8576
13 8.193955
14 1785.668
15 55.45426
16 11268.58
17 77.02023
18 384.4957
19 23451.7
20 35.74494
21 9.752111
22 28898.26
23 73.59967
24 2674.085
25 5048.595
26 455.6442
27 5315.577
28 8.411589
29 8.430881
30 6865.054
31 24.03958

Total number of rows: 43376

Table truncated, full table size 620 Kbytes.




Supplementary file Size Download File type/resource
GSM269783.txt.gz 7.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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