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Sample GSM269779 Query DataSets for GSM269779
Status Public on Feb 20, 2009
Title UIP, biological rep16
Sample type RNA
 
Source name Lung tissue with usual interstitial pneumonia (UIP), biological rep16
Organism Homo sapiens
Characteristics Tissue from a patient with pathological diagnosis of usual interstitial pneumonia.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA followed by RNeasy cleanup was performed according to the manufacturers' instructions.
Label Cy3
Label protocol Cy3 labeled cRNA were prepared according to the standard Agilent protocol from 500ng total RNA.
 
Hybridization protocol Following fragmentation, 1.5 ug of cRNA were hybridized for 17 hr at 65C on Agilent 4x44k Whole Human Genome Array. Arrays were washed according to the manufacturer's protocol.
Scan protocol Agilent Scanner protocol
Description Lung tissue samples obtained from the University of Pittsburgh Health Sciences Tissue Bank. Gene expression data from a lung with usual interstitial pneumonia.
Data processing Agilent Feature Extraction
 
Submission date Feb 28, 2008
Last update date Mar 26, 2008
Contact name Kazuhisa Konishi
E-mail(s) konishi.kazuhisa@med.osaka-cu.ac.jp
Phone 412-647-3156
Organization name University of Pittsburgh
Department Pulmonry, Allergy, and Critical Care Medicine
Lab Kaminski Lab
Street address 1212 Kaufmann Building 3471 Fifth Ave
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platform ID GPL4133
Series (1)
GSE10667 MMP1 and MMP7 as potential peripheral blood biomarkers in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE gProcessedSignal

Data table
ID_REF VALUE
12 711.856
13 3.901003
14 249.8723
15 15.92556
16 5710.153
17 15.64929
18 508.4217
19 18417.68
20 10.67949
21 3.940392
22 32415.3
23 3.952225
24 3428.011
25 2811.354
26 371.3703
27 79.23755
28 3.985164
29 3.992652
30 4361.038
31 109.4779

Total number of rows: 43376

Table truncated, full table size 620 Kbytes.




Supplementary file Size Download File type/resource
GSM269779.txt.gz 7.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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