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Sample GSM269774 Query DataSets for GSM269774
Status Public on Feb 20, 2009
Title UIP, biological rep11
Sample type RNA
 
Source name Lung tissue with usual interstitial pneumonia (UIP), biological rep11
Organism Homo sapiens
Characteristics Tissue from a patient with pathological diagnosis of usual interstitial pneumonia.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA followed by RNeasy cleanup was performed according to the manufacturers' instructions.
Label Cy3
Label protocol Cy3 labeled cRNA were prepared according to the standard Agilent protocol from 500ng total RNA.
 
Hybridization protocol Following fragmentation, 1.5 ug of cRNA were hybridized for 17 hr at 65C on Agilent 4x44k Whole Human Genome Array. Arrays were washed according to the manufacturer's protocol.
Scan protocol Agilent Scanner protocol
Description Lung tissue samples obtained from the University of Pittsburgh Health Sciences Tissue Bank. Gene expression data from a lung with usual interstitial pneumonia.
Data processing Agilent Feature Extraction
 
Submission date Feb 28, 2008
Last update date Mar 26, 2008
Contact name Kazuhisa Konishi
E-mail(s) konishi.kazuhisa@med.osaka-cu.ac.jp
Phone 412-647-3156
Organization name University of Pittsburgh
Department Pulmonry, Allergy, and Critical Care Medicine
Lab Kaminski Lab
Street address 1212 Kaufmann Building 3471 Fifth Ave
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platform ID GPL4133
Series (1)
GSE10667 MMP1 and MMP7 as potential peripheral blood biomarkers in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE gProcessedSignal

Data table
ID_REF VALUE
12 481.1705
13 4.065733
14 1849.52
15 30.89277
16 12762.53
17 50.19281
18 446.6475
19 22721.42
20 31.05314
21 6.595792
22 26330.3
23 42.43076
24 1874.586
25 7838.916
26 479.5297
27 1729.863
28 3.143596
29 3.141302
30 9650.995
31 109.0613

Total number of rows: 43376

Table truncated, full table size 620 Kbytes.




Supplementary file Size Download File type/resource
GSM269774.txt.gz 7.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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