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Sample GSM269767 Query DataSets for GSM269767
Status Public on Feb 20, 2009
Title UIP, biological rep4
Sample type RNA
 
Source name Lung tissue with usual interstitial pneumonia (UIP), biological rep4
Organism Homo sapiens
Characteristics Tissue from a patient with pathological diagnosis of usual interstitial pneumonia.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA followed by RNeasy cleanup was performed according to the manufacturers' instructions.
Label Cy3
Label protocol Cy3 labeled cRNA were prepared according to the standard Agilent protocol from 500ng total RNA.
 
Hybridization protocol Following fragmentation, 1.5 ug of cRNA were hybridized for 17 hr at 65C on Agilent 4x44k Whole Human Genome Array. Arrays were washed according to the manufacturer's protocol.
Scan protocol Agilent Scanner protocol
Description Lung tissue samples obtained from the University of Pittsburgh Health Sciences Tissue Bank. Gene expression data from a lung with usual interstitial pneumonia.
Data processing Agilent Feature Extraction
 
Submission date Feb 28, 2008
Last update date Mar 26, 2008
Contact name Kazuhisa Konishi
E-mail(s) konishi.kazuhisa@med.osaka-cu.ac.jp
Phone 412-647-3156
Organization name University of Pittsburgh
Department Pulmonry, Allergy, and Critical Care Medicine
Lab Kaminski Lab
Street address 1212 Kaufmann Building 3471 Fifth Ave
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platform ID GPL4133
Series (1)
GSE10667 MMP1 and MMP7 as potential peripheral blood biomarkers in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE gProcessedSignal

Data table
ID_REF VALUE
12 95.55288
13 3.413787
14 664.7394
15 18.02726
16 6375.705
17 22.95703
18 70.69714
19 21272.84
20 19.26412
21 3.3986
22 27272.98
23 7.575267
24 1417.097
25 4706.816
26 419.0145
27 1710.077
28 3.393866
29 4.644735
30 10377.23
31 35.50127

Total number of rows: 43376

Table truncated, full table size 620 Kbytes.




Supplementary file Size Download File type/resource
GSM269767.txt.gz 7.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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