|
| Status |
Public on May 12, 2017 |
| Title |
whole_blood_case_128 |
| Sample type |
RNA |
| |
|
| Source name |
whole_blood_case
|
| Organism |
Homo sapiens |
| Characteristics |
subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 61.3
tissue: whole blood
batch: 2
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
|
| Label |
biotin
|
| Label protocol |
standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
|
| Description |
SAMPLE 190
|
| Data processing |
The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
|
| |
|
| Submission date |
May 11, 2017 |
| Last update date |
Jan 23, 2018 |
| Contact name |
Gwenael G.R. Leday |
| E-mail(s) |
gwenael.leday@mrc-bsu.cam.ac.uk
|
| Organization name |
University of Cambridge
|
| Department |
School of Clinical Medicine
|
| Lab |
MRC Biostatistics Unit
|
| Street address |
Forvie Site, Robinson Way
|
| City |
Cambridge |
| ZIP/Postal code |
CB2 0SR |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE98793 |
Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls |
|
