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Sample GSM2612283 Query DataSets for GSM2612283
Status Public on May 12, 2017
Title whole_blood_case_127
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: F
age: 62.3
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 188
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.383187223
1557055_s_at 7.536009169
227201_at 5.54684804
231942_at 3.995481143
235497_at 4.066366303
236624_at 4.218505271
237011_at 4.079251868
1555979_at 6.685959287
1555980_a_at 5.309679844
1560477_a_at 6.401593178
1559139_at 3.076895552
202115_s_at 7.549792227
1555650_at 5.769641861
229792_at 5.80149956
224125_at 6.822797913
224501_at 5.347113286
227347_x_at 5.364839598
205483_s_at 9.082920192
212283_at 5.586053197
212285_s_at 6.287512015

Total number of rows: 54675

Table truncated, full table size 1211 Kbytes.




Supplementary file Size Download File type/resource
GSM2612283_GP2842_92_SS490556_HG-U133_Plus_2_HCHP-228088_.CEL.gz 5.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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