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Sample GSM2612281 Query DataSets for GSM2612281
Status Public on May 12, 2017
Title whole_blood_case_125
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 48.6
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 186
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.469696284
1557055_s_at 8.159907487
227201_at 5.452410456
231942_at 3.775204207
235497_at 5.079534522
236624_at 4.228221919
237011_at 3.436984058
1555979_at 6.011803688
1555980_a_at 5.135182944
1560477_a_at 6.209876725
1559139_at 3.991724423
202115_s_at 7.629069631
1555650_at 5.022763799
229792_at 5.871911269
224125_at 6.374589448
224501_at 5.242905778
227347_x_at 4.66414463
205483_s_at 10.46961384
212283_at 5.171908053
212285_s_at 6.721563958

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612281_GP2842_90_SS490551_HG-U133_Plus_2_HCHP-228086_.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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