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Sample GSM2612280 Query DataSets for GSM2612280
Status Public on May 12, 2017
Title whole_blood_control_61
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: F
age: 62.2
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 185
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.345180139
1557055_s_at 7.444700233
227201_at 5.625100708
231942_at 3.631609793
235497_at 4.001598506
236624_at 4.188716445
237011_at 3.576660709
1555979_at 6.119707147
1555980_a_at 4.832560128
1560477_a_at 5.863301805
1559139_at 3.569315073
202115_s_at 7.338137331
1555650_at 4.914626249
229792_at 5.628334512
224125_at 6.385735852
224501_at 4.986763869
227347_x_at 4.750130206
205483_s_at 9.06447973
212283_at 5.168107111
212285_s_at 6.367467164

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612280_GP2842_89_SS490547_HG-U133_Plus_2_HCHP-228085_.CEL.gz 5.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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