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Sample GSM2612279 Query DataSets for GSM2612279
Status Public on May 12, 2017
Title whole_blood_control_60
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: F
age: 52.6
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 184
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.096958577
1557055_s_at 7.071036349
227201_at 5.335373088
231942_at 3.691633031
235497_at 3.5190275
236624_at 4.265421626
237011_at 3.399295694
1555979_at 6.374229304
1555980_a_at 4.895022732
1560477_a_at 6.055752833
1559139_at 3.375215107
202115_s_at 7.606154198
1555650_at 5.108121046
229792_at 5.589773947
224125_at 6.389735718
224501_at 5.353240047
227347_x_at 5.009947399
205483_s_at 8.592575696
212283_at 5.239668835
212285_s_at 6.611421453

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612279_GP2842_88_SS490523_HG-U133_Plus_2_HCHP-228084_.CEL.gz 4.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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