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Sample GSM2612272 Query DataSets for GSM2612272
Status Public on May 12, 2017
Title whole_blood_control_57
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: F
age: 32.7
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 177
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.462426234
1557055_s_at 7.822682027
227201_at 5.888066736
231942_at 3.694285893
235497_at 5.069885532
236624_at 4.394869557
237011_at 3.554486999
1555979_at 6.053733842
1555980_a_at 4.860980344
1560477_a_at 5.801858487
1559139_at 3.178621036
202115_s_at 7.727424872
1555650_at 4.862015697
229792_at 5.804267348
224125_at 6.071414073
224501_at 4.935788863
227347_x_at 5.03197336
205483_s_at 8.605502448
212283_at 5.011264023
212285_s_at 6.378116561

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612272_GP2842_81_SS490537_HG-U133_Plus_2_HCHP-228077_.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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