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Sample GSM2612269 Query DataSets for GSM2612269
Status Public on May 12, 2017
Title whole_blood_case_118
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: F
age: 49.4
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 174
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.306239136
1557055_s_at 7.906969426
227201_at 5.437361374
231942_at 3.825974044
235497_at 4.14985796
236624_at 3.465542175
237011_at 3.637239837
1555979_at 6.338800225
1555980_a_at 5.029876786
1560477_a_at 6.208301177
1559139_at 2.82565861
202115_s_at 7.336562987
1555650_at 5.114841594
229792_at 5.728761973
224125_at 6.452151444
224501_at 5.203283098
227347_x_at 4.935401058
205483_s_at 8.708797237
212283_at 5.301445664
212285_s_at 6.681630463

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612269_GP2842_78_SS490526_HG-U133_Plus_2_HCHP-228074_.CEL.gz 4.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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