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Sample GSM2612255 Query DataSets for GSM2612255
Status Public on May 12, 2017
Title whole_blood_case_106
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: F
age: 52.7
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 160
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.177543609
1557055_s_at 7.392664603
227201_at 5.438994315
231942_at 3.6940188
235497_at 4.823157468
236624_at 4.144836076
237011_at 3.703062925
1555979_at 5.757860342
1555980_a_at 4.632327972
1560477_a_at 5.779439357
1559139_at 3.259464337
202115_s_at 7.244377111
1555650_at 4.974072973
229792_at 5.622123485
224125_at 6.335756335
224501_at 5.042706768
227347_x_at 4.74257944
205483_s_at 9.83553321
212283_at 5.348599864
212285_s_at 6.53471877

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612255_GP2842_64_SS490478_HG-U133_Plus_2_HCHP-228060_.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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