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Sample GSM2612253 Query DataSets for GSM2612253
Status Public on May 12, 2017
Title whole_blood_case_104
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 49.6
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 158
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.926516756
1557055_s_at 7.754649314
227201_at 5.514115871
231942_at 3.664927924
235497_at 4.228485752
236624_at 4.354341954
237011_at 3.423801408
1555979_at 6.160939673
1555980_a_at 4.786422404
1560477_a_at 5.908104233
1559139_at 3.336678852
202115_s_at 7.651017889
1555650_at 4.730565115
229792_at 5.990858361
224125_at 6.40390317
224501_at 5.215040812
227347_x_at 4.631469185
205483_s_at 8.512765663
212283_at 5.121994609
212285_s_at 6.299961312

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612253_GP2842_62_SS490540_HG-U133_Plus_2_HCHP-228058_.CEL.gz 4.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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