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Sample GSM2612252 Query DataSets for GSM2612252
Status Public on May 12, 2017
Title whole_blood_control_54
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: F
age: 46.2
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 157
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.779493948
1557055_s_at 7.47971749
227201_at 5.534930418
231942_at 3.793619456
235497_at 4.392478821
236624_at 4.228221919
237011_at 3.67302167
1555979_at 6.150543017
1555980_a_at 4.804198281
1560477_a_at 5.951690912
1559139_at 3.113021891
202115_s_at 7.371463609
1555650_at 4.845056544
229792_at 5.990283116
224125_at 6.13728266
224501_at 5.275145424
227347_x_at 4.903242717
205483_s_at 8.669994047
212283_at 5.171908053
212285_s_at 6.143718696

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612252_GP2842_61_SS490536_HG-U133_Plus_2_HCHP-228057_.CEL.gz 4.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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