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Sample GSM2612245 Query DataSets for GSM2612245
Status Public on May 12, 2017
Title whole_blood_control_50
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: F
age: 55.9
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 150
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.603996604
1557055_s_at 7.713279715
227201_at 5.619137132
231942_at 3.771439112
235497_at 3.9189118
236624_at 4.050633994
237011_at 3.862851849
1555979_at 6.262175869
1555980_a_at 5.027578228
1560477_a_at 6.078903651
1559139_at 3.1027022
202115_s_at 7.791059396
1555650_at 5.148301282
229792_at 6.231721166
224125_at 6.578613814
224501_at 5.325794107
227347_x_at 5.000141859
205483_s_at 8.926146998
212283_at 5.121169802
212285_s_at 6.218263248

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612245_GP2842_54_SS490480_HG-U133_Plus_2_HCHP-228050_.CEL.gz 4.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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