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Sample GSM2612240 Query DataSets for GSM2612240
Status Public on May 12, 2017
Title whole_blood_case_97
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 46.5
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 145
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.152774612
1557055_s_at 7.518231112
227201_at 5.280632644
231942_at 3.744601646
235497_at 4.333319318
236624_at 4.041109145
237011_at 3.604369386
1555979_at 5.954957373
1555980_a_at 4.567924952
1560477_a_at 5.922053773
1559139_at 3.088605006
202115_s_at 7.477453498
1555650_at 4.783471258
229792_at 5.781280142
224125_at 6.418425169
224501_at 5.191096005
227347_x_at 4.818637735
205483_s_at 8.130047451
212283_at 5.128380906
212285_s_at 6.066196931

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612240_GP2842_49_SS490550_HG-U133_Plus_2_HCHP-228045_.CEL.gz 4.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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