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Sample GSM2612236 Query DataSets for GSM2612236
Status Public on May 12, 2017
Title whole_blood_control_45
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: M
age: 35.1
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 141
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.51715952
1557055_s_at 7.92436836
227201_at 5.452967739
231942_at 3.659618743
235497_at 4.680404419
236624_at 4.36441617
237011_at 3.540627257
1555979_at 5.831293392
1555980_a_at 4.538767818
1560477_a_at 5.798050416
1559139_at 3.132255889
202115_s_at 7.448441218
1555650_at 4.813315965
229792_at 5.951341107
224125_at 6.139096548
224501_at 5.036648129
227347_x_at 4.491288901
205483_s_at 8.126304594
212283_at 5.424375123
212285_s_at 6.557327064

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612236_GP2842_45_SS490534_HG-U133_Plus_2_HCHP-228467_.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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