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Sample GSM2612229 Query DataSets for GSM2612229
Status Public on May 12, 2017
Title whole_blood_case_93
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 65.9
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 134
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 6.259073278
1557055_s_at 7.46564084
227201_at 5.854243806
231942_at 3.449875648
235497_at 4.634875653
236624_at 3.379050179
237011_at 3.197745161
1555979_at 5.777889907
1555980_a_at 4.626296485
1560477_a_at 5.964162249
1559139_at 2.869990043
202115_s_at 7.441435414
1555650_at 4.783338705
229792_at 6.390160158
224125_at 6.192077456
224501_at 4.962363677
227347_x_at 4.529074462
205483_s_at 8.770164615
212283_at 5.130814034
212285_s_at 6.533172536

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612229_GP2842_38_SS490514_HG-U133_Plus_2_HCHP-228460_.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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