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Sample GSM2612227 Query DataSets for GSM2612227
Status Public on May 12, 2017
Title whole_blood_control_41
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: F
age: 49.3
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 132
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.328488631
1557055_s_at 7.884781948
227201_at 5.680243307
231942_at 3.636212246
235497_at 4.45805277
236624_at 4.478940964
237011_at 3.685990342
1555979_at 5.887265215
1555980_a_at 4.827889006
1560477_a_at 5.954047037
1559139_at 3.129098864
202115_s_at 7.320857915
1555650_at 4.701283767
229792_at 5.978490484
224125_at 6.212996659
224501_at 5.171663916
227347_x_at 4.686171135
205483_s_at 8.304044567
212283_at 5.40582174
212285_s_at 6.374233315

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612227_GP2842_36_SS490553_HG-U133_Plus_2_HCHP-228458_.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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