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Sample GSM2612221 Query DataSets for GSM2612221
Status Public on May 12, 2017
Title whole_blood_case_86
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 50.8
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 126
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.643210455
1557055_s_at 7.463587747
227201_at 5.721625559
231942_at 3.450946566
235497_at 4.711407222
236624_at 4.455923136
237011_at 3.280704348
1555979_at 5.956662838
1555980_a_at 4.602925674
1560477_a_at 5.840157821
1559139_at 2.943572481
202115_s_at 7.40959488
1555650_at 4.736748126
229792_at 5.726578857
224125_at 6.256091442
224501_at 4.948006211
227347_x_at 4.669214172
205483_s_at 9.748244941
212283_at 5.077183928
212285_s_at 7.038625232

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612221_GP2842_30_SS490532_HG-U133_Plus_2_HCHP-228452_.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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