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Sample GSM2612220 Query DataSets for GSM2612220
Status Public on May 12, 2017
Title whole_blood_case_85
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: F
age: 39.3
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 125
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.802708799
1557055_s_at 7.447488055
227201_at 5.806006396
231942_at 3.578208695
235497_at 4.155512821
236624_at 4.208691382
237011_at 3.807498724
1555979_at 6.144463491
1555980_a_at 4.774661783
1560477_a_at 6.041019361
1559139_at 3.191795378
202115_s_at 7.953256268
1555650_at 4.820178828
229792_at 6.536259503
224125_at 6.587006477
224501_at 5.536062768
227347_x_at 4.870947264
205483_s_at 8.727124453
212283_at 5.282712708
212285_s_at 6.537977953

Total number of rows: 54675

Table truncated, full table size 1211 Kbytes.




Supplementary file Size Download File type/resource
GSM2612220_GP2842_29_SS490500_HG-U133_Plus_2_HCHP-228451_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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