NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2612211 Query DataSets for GSM2612211
Status Public on May 12, 2017
Title whole_blood_case_79
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: M
age: 56
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 116
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.731776014
1557055_s_at 7.415857425
227201_at 5.245958217
231942_at 3.353531504
235497_at 5.274603954
236624_at 4.337147069
237011_at 3.967188897
1555979_at 5.618390975
1555980_a_at 4.581837917
1560477_a_at 5.672842593
1559139_at 2.659884309
202115_s_at 7.22460758
1555650_at 4.69048541
229792_at 5.845397312
224125_at 6.011631116
224501_at 4.923892184
227347_x_at 4.733339934
205483_s_at 8.064007476
212283_at 4.832510529
212285_s_at 6.50122781

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612211_GP2842_20_SS490491_HG-U133_Plus_2_HCHP-228442_.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap