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Sample GSM2612208 Query DataSets for GSM2612208
Status Public on May 12, 2017
Title whole_blood_case_76
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: M
age: 34.4
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 113
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.086927383
1557055_s_at 7.549014207
227201_at 5.548818757
231942_at 3.881532272
235497_at 4.705879974
236624_at 4.101256456
237011_at 3.487883856
1555979_at 6.087164106
1555980_a_at 4.999777289
1560477_a_at 5.895926565
1559139_at 3.180760547
202115_s_at 7.383991394
1555650_at 4.930967844
229792_at 5.988895831
224125_at 6.364512766
224501_at 5.166087686
227347_x_at 4.931505864
205483_s_at 9.443396604
212283_at 5.456500116
212285_s_at 6.459470362

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612208_GP2842_17_SS490542_HG-U133_Plus_2_HCHP-228439_.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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