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Sample GSM2612198 Query DataSets for GSM2612198
Status Public on May 12, 2017
Title whole_blood_case_69
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 49.3
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 103
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.728185928
1557055_s_at 7.421586953
227201_at 5.4166622
231942_at 3.280829478
235497_at 4.314687953
236624_at 3.954936058
237011_at 3.771345683
1555979_at 5.919740095
1555980_a_at 4.731253047
1560477_a_at 5.932287796
1559139_at 2.907374844
202115_s_at 7.34712325
1555650_at 4.827373441
229792_at 5.865703882
224125_at 6.328008649
224501_at 5.240905009
227347_x_at 4.682239167
205483_s_at 8.798531532
212283_at 5.095719498
212285_s_at 6.340191322

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612198_GP2842_07_SS490519_HG-U133_Plus_2_HCHP-228429_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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