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Sample GSM2612196 Query DataSets for GSM2612196
Status Public on May 12, 2017
Title whole_blood_case_68
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 39.1
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 101
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.968225505
1557055_s_at 7.854523021
227201_at 5.586644011
231942_at 3.998866024
235497_at 4.296761189
236624_at 4.216289323
237011_at 4.034919062
1555979_at 6.063508076
1555980_a_at 4.680657955
1560477_a_at 5.860384673
1559139_at 3.4210658
202115_s_at 8.104289292
1555650_at 4.928030314
229792_at 6.282655919
224125_at 6.302459329
224501_at 5.187387636
227347_x_at 4.849121526
205483_s_at 9.105935578
212283_at 5.35240428
212285_s_at 6.91805868

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612196_GP2842_05_SS490506_HG-U133_Plus_2_HCHP-228427_.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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