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Sample GSM2612193 Query DataSets for GSM2612193
Status Public on May 12, 2017
Title whole_blood_case_65
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: M
age: 43.5
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 98
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.369820209
1557055_s_at 7.255032222
227201_at 5.536575754
231942_at 3.498902891
235497_at 4.681514986
236624_at 4.270028717
237011_at 3.607150785
1555979_at 5.7303052
1555980_a_at 5.002134886
1560477_a_at 5.914684916
1559139_at 3.226139443
202115_s_at 7.75219231
1555650_at 5.034799196
229792_at 5.993794487
224125_at 6.340291262
224501_at 5.101641036
227347_x_at 5.002134886
205483_s_at 10.27100604
212283_at 4.995544634
212285_s_at 7.405255017

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612193_GP2842_02_SS490531_HG-U133_Plus_2_HCHP-228424_.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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