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Sample GSM2612190 Query DataSets for GSM2612190
Status Public on May 12, 2017
Title whole_blood_case_63
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 52.6
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 95
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.616928949
1557055_s_at 7.635171954
227201_at 4.297935055
231942_at 3.581547898
235497_at 3.933393036
236624_at 4.104939539
237011_at 3.332579296
1555979_at 6.144485486
1555980_a_at 5.010747378
1560477_a_at 5.841168543
1559139_at 3.335974235
202115_s_at 7.066989921
1555650_at 5.530482437
229792_at 6.14671511
224125_at 6.478962481
224501_at 5.553528931
227347_x_at 4.323434697
205483_s_at 8.755414373
212283_at 5.474430364
212285_s_at 6.742836737

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612190_GP1531_95A_11_SS124142_HG-U133_Plus_2_HCHP-87371_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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