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Sample GSM2612189 Query DataSets for GSM2612189
Status Public on May 12, 2017
Title whole_blood_case_62
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 64.5
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 94
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.219320061
1557055_s_at 6.067759794
227201_at 4.559208668
231942_at 4.510546532
235497_at 3.698701187
236624_at 4.278437639
237011_at 3.958081705
1555979_at 6.120470051
1555980_a_at 4.714235747
1560477_a_at 5.677369303
1559139_at 3.868794251
202115_s_at 7.051556544
1555650_at 4.734466149
229792_at 6.59892212
224125_at 6.981136888
224501_at 5.422691732
227347_x_at 4.927123265
205483_s_at 7.79197299
212283_at 5.298688757
212285_s_at 6.821416122

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612189_GP1531_94A_58_SS124140_HG-U133_Plus_2_HCHP-90330_.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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