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Sample GSM2612184 Query DataSets for GSM2612184
Status Public on May 12, 2017
Title whole_blood_case_57
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 31.7
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 89
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.776865278
1557055_s_at 6.650293516
227201_at 4.609642839
231942_at 3.212584134
235497_at 3.88525833
236624_at 3.97555315
237011_at 3.544950796
1555979_at 6.560670543
1555980_a_at 3.846944103
1560477_a_at 6.026754232
1559139_at 3.096601509
202115_s_at 7.219219039
1555650_at 5.036345103
229792_at 5.847140841
224125_at 6.644963132
224501_at 5.511390228
227347_x_at 5.211216111
205483_s_at 8.994751923
212283_at 5.295898324
212285_s_at 5.947985421

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612184_GP1531_89A_05_SS124188_HG-U133_Plus_2_HCHP-87365_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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