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Sample GSM2612179 Query DataSets for GSM2612179
Status Public on May 12, 2017
Title whole_blood_case_52
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 40.8
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 84
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.541034728
1557055_s_at 6.92502794
227201_at 4.245603791
231942_at 3.998780097
235497_at 4.360040678
236624_at 4.05364456
237011_at 3.408573841
1555979_at 5.820743602
1555980_a_at 4.433222832
1560477_a_at 6.149187397
1559139_at 3.214813518
202115_s_at 7.534849585
1555650_at 5.366153988
229792_at 6.046198128
224125_at 6.503135463
224501_at 5.098537489
227347_x_at 5.432688292
205483_s_at 8.205748089
212283_at 4.872931072
212285_s_at 6.569840506

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612179_GP1531_84A_14_SS124180_HG-U133_Plus_2_HCHP-87374_.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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