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Sample GSM2612176 Query DataSets for GSM2612176
Status Public on May 12, 2017
Title whole_blood_case_49
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: M
age: 35.6
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 81
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.141017348
1557055_s_at 7.506802385
227201_at 5.181046152
231942_at 4.195253885
235497_at 3.229035745
236624_at 4.068455059
237011_at 3.481447055
1555979_at 6.610240623
1555980_a_at 4.958337573
1560477_a_at 6.558143724
1559139_at 3.104559676
202115_s_at 7.526900628
1555650_at 5.51686119
229792_at 6.191506528
224125_at 7.218871075
224501_at 5.582372342
227347_x_at 4.990962134
205483_s_at 8.484998371
212283_at 5.750400326
212285_s_at 6.126064921

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612176_GP1531_81A_71_SS124174_HG-U133_Plus_2_HCHP-90343_.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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