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Sample GSM2612167 Query DataSets for GSM2612167
Status Public on May 12, 2017
Title whole_blood_case_40
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 62
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 72
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.088710239
1557055_s_at 6.213408718
227201_at 4.838205254
231942_at 3.841079351
235497_at 4.948465355
236624_at 4.364734439
237011_at 3.424782682
1555979_at 6.185953065
1555980_a_at 4.771462408
1560477_a_at 6.016793702
1559139_at 3.29725953
202115_s_at 7.951812665
1555650_at 4.992774113
229792_at 6.65290226
224125_at 6.448958937
224501_at 5.234092621
227347_x_at 5.12658594
205483_s_at 8.680506507
212283_at 5.551617336
212285_s_at 6.304816559

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612167_GP1531_72A_87_SS124158_HG-U133_Plus_2_HCHP-91615_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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