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Sample GSM2612159 Query DataSets for GSM2612159
Status Public on May 12, 2017
Title whole_blood_case_32
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: F
age: 38
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 64
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.658030763
1557055_s_at 6.21204957
227201_at 5.086513578
231942_at 3.681392623
235497_at 4.280101621
236624_at 4.086806218
237011_at 3.310203342
1555979_at 6.052618302
1555980_a_at 5.119671528
1560477_a_at 6.160393169
1559139_at 3.250095586
202115_s_at 7.63025822
1555650_at 5.176811517
229792_at 6.543050169
224125_at 6.972598953
224501_at 5.741599969
227347_x_at 4.783600307
205483_s_at 8.746187659
212283_at 5.533480861
212285_s_at 6.917582614

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612159_GP1531_64D_47_SS124208_HG-U133_Plus_2_HCHP-88543_.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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