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Sample GSM2612155 Query DataSets for GSM2612155
Status Public on May 12, 2017
Title whole_blood_case_28
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: F
age: 41.1
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 60
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.707812429
1557055_s_at 6.512024075
227201_at 4.207937045
231942_at 4.023894406
235497_at 3.739056727
236624_at 4.609565909
237011_at 4.018401558
1555979_at 6.367131308
1555980_a_at 5.301939293
1560477_a_at 6.058233185
1559139_at 3.260684451
202115_s_at 7.515701533
1555650_at 4.859171434
229792_at 5.82069839
224125_at 7.058381248
224501_at 5.942236187
227347_x_at 5.401579967
205483_s_at 8.996448062
212283_at 5.339819505
212285_s_at 6.80122709

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612155_GP1531_60D_81_SS124200_HG-U133_Plus_2_HCHP-91609_.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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