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Sample GSM2612152 Query DataSets for GSM2612152
Status Public on May 12, 2017
Title whole_blood_case_25
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: M
age: 41.1
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 57
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.28700826
1557055_s_at 6.321937941
227201_at 5.1588219
231942_at 3.962551386
235497_at 4.028766846
236624_at 4.655472278
237011_at 3.643446471
1555979_at 6.268142953
1555980_a_at 4.759962066
1560477_a_at 6.004250348
1559139_at 2.889186888
202115_s_at 7.685115342
1555650_at 4.841067021
229792_at 6.610737652
224125_at 6.898855437
224501_at 5.540266665
227347_x_at 5.504331968
205483_s_at 8.684111125
212283_at 5.297085871
212285_s_at 6.622897508

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612152_GP1531_57D_78_SS124252_HG-U133_Plus_2_HCHP-91606_.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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