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Sample GSM2612151 Query DataSets for GSM2612151
Status Public on May 12, 2017
Title whole_blood_case_24
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: F
age: 48
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 56
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.055042829
1557055_s_at 6.644874015
227201_at 4.867906784
231942_at 3.811230045
235497_at 3.333356064
236624_at 4.933167486
237011_at 4.109325021
1555979_at 5.988900624
1555980_a_at 5.137108179
1560477_a_at 6.156843561
1559139_at 3.010075512
202115_s_at 7.727640275
1555650_at 5.094294088
229792_at 6.202217605
224125_at 6.832146882
224501_at 5.604304148
227347_x_at 5.598839551
205483_s_at 9.276051405
212283_at 5.195957151
212285_s_at 6.550055004

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612151_GP1531_56D_82_SS124250_HG-U133_Plus_2_HCHP-91610_.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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