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Sample GSM2612146 Query DataSets for GSM2612146
Status Public on May 12, 2017
Title whole_blood_case_19
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: F
age: 65
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 51
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.818933767
1557055_s_at 7.079601575
227201_at 4.899041881
231942_at 3.955407487
235497_at 4.212314471
236624_at 4.17317175
237011_at 3.293224934
1555979_at 6.193340376
1555980_a_at 5.158119461
1560477_a_at 5.996330603
1559139_at 3.333933115
202115_s_at 7.620561948
1555650_at 5.337270837
229792_at 6.516407848
224125_at 6.560172224
224501_at 5.646562651
227347_x_at 5.093341356
205483_s_at 8.069310947
212283_at 5.513450325
212285_s_at 6.368536222

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612146_GP1531_51D_88_SS124242_HG-U133_Plus_2_HCHP-91616_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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