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Sample GSM2612140 Query DataSets for GSM2612140
Status Public on May 12, 2017
Title whole_blood_case_13
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: F
age: 62
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 45
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.117866215
1557055_s_at 6.438415
227201_at 4.979948578
231942_at 3.857801823
235497_at 4.235547233
236624_at 4.111418471
237011_at 3.106002816
1555979_at 6.437959392
1555980_a_at 4.956458116
1560477_a_at 6.287950552
1559139_at 3.176199739
202115_s_at 7.841751583
1555650_at 4.969765855
229792_at 6.521325738
224125_at 6.745433952
224501_at 5.444881435
227347_x_at 5.072528918
205483_s_at 8.98772698
212283_at 5.500511814
212285_s_at 6.521050739

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612140_GP1531_45D_31_SS124230_HG-U133_Plus_2_HCHP-88527_.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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