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Sample GSM2612139 Query DataSets for GSM2612139
Status Public on May 12, 2017
Title whole_blood_case_12
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: F
age: 46.7
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 44
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.950751991
1557055_s_at 6.975285896
227201_at 5.235071348
231942_at 4.018217099
235497_at 3.695624829
236624_at 4.201305705
237011_at 3.875331381
1555979_at 6.511879865
1555980_a_at 5.264029476
1560477_a_at 6.313402011
1559139_at 2.75394154
202115_s_at 7.585435801
1555650_at 5.480644147
229792_at 6.771261733
224125_at 6.939200797
224501_at 5.699884054
227347_x_at 5.495011735
205483_s_at 8.49741551
212283_at 5.66597112
212285_s_at 6.451255247

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612139_GP1531_44D_25_SS124194_HG-U133_Plus_2_HCHP-88521_.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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