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Sample GSM2612138 Query DataSets for GSM2612138
Status Public on May 12, 2017
Title whole_blood_case_11
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: M
age: 59.2
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 43
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.113397887
1557055_s_at 7.389904491
227201_at 5.559344934
231942_at 3.786726238
235497_at 3.731029714
236624_at 5.042328477
237011_at 3.855958605
1555979_at 6.461673163
1555980_a_at 5.077603467
1560477_a_at 6.190094747
1559139_at 3.422245432
202115_s_at 7.852099432
1555650_at 5.061734203
229792_at 5.792147637
224125_at 6.939162024
224501_at 5.97196467
227347_x_at 5.668680108
205483_s_at 8.562032819
212283_at 5.619131296
212285_s_at 5.933444637

Total number of rows: 54675

Table truncated, full table size 1211 Kbytes.




Supplementary file Size Download File type/resource
GSM2612138_GP1531_43D_52_SS124228_HG-U133_Plus_2_HCHP-90324_.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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