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Sample GSM2612131 Query DataSets for GSM2612131
Status Public on May 12, 2017
Title whole_blood_case_4
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: F
age: 48.7
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 36
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.487371679
1557055_s_at 5.778811767
227201_at 4.317491597
231942_at 4.051595817
235497_at 3.753818234
236624_at 4.801104875
237011_at 3.829925427
1555979_at 6.200204759
1555980_a_at 3.510316553
1560477_a_at 5.612274306
1559139_at 3.305236583
202115_s_at 6.752077076
1555650_at 4.86517315
229792_at 6.310064071
224125_at 6.948984875
224501_at 5.542494812
227347_x_at 4.726451898
205483_s_at 7.746951364
212283_at 5.160942204
212285_s_at 7.06547948

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612131_GP1531_36D_21_SS124214_HG-U133_Plus_2_HCHP-87381_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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