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Sample GSM2612124 Query DataSets for GSM2612124
Status Public on May 12, 2017
Title whole_blood_control_29
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: F
age: 50.1
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 29
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.037630132
1557055_s_at 6.502157675
227201_at 4.871458474
231942_at 4.145940472
235497_at 4.147959324
236624_at 4.710699021
237011_at 3.826431948
1555979_at 6.566711453
1555980_a_at 5.034507152
1560477_a_at 6.087528421
1559139_at 3.105953064
202115_s_at 7.45927516
1555650_at 5.272908131
229792_at 5.584136223
224125_at 6.49170928
224501_at 5.563911642
227347_x_at 5.14848602
205483_s_at 8.211451919
212283_at 5.664216893
212285_s_at 6.511645613

Total number of rows: 54675

Table truncated, full table size 1211 Kbytes.




Supplementary file Size Download File type/resource
GSM2612124_GP1531_29C_36_SS124074_HG-U133_Plus_2_HCHP-88532_.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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