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Sample GSM2612121 Query DataSets for GSM2612121
Status Public on May 12, 2017
Title whole_blood_control_26
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: F
age: 48.6
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 26
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.667053637
1557055_s_at 6.450145676
227201_at 4.836147641
231942_at 4.247733209
235497_at 3.730819797
236624_at 4.538727856
237011_at 3.90547379
1555979_at 5.812707057
1555980_a_at 4.663244588
1560477_a_at 6.241345865
1559139_at 3.316476774
202115_s_at 8.059699798
1555650_at 4.851952363
229792_at 6.806306092
224125_at 6.765291331
224501_at 5.849256963
227347_x_at 5.399891876
205483_s_at 8.747688724
212283_at 5.757893429
212285_s_at 7.102708152

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612121_GP1531_26C_74_SS124126_HG-U133_Plus_2_HCHP-91602_.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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