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Sample GSM2612118 Query DataSets for GSM2612118
Status Public on May 12, 2017
Title whole_blood_control_23
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: F
age: 44.4
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 23
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.721519211
1557055_s_at 7.114136735
227201_at 5.134324611
231942_at 3.708891302
235497_at 4.305059558
236624_at 3.676871784
237011_at 3.626089625
1555979_at 6.25819218
1555980_a_at 4.647937001
1560477_a_at 5.866832935
1559139_at 3.349263121
202115_s_at 7.72145471
1555650_at 5.263341482
229792_at 5.681316062
224125_at 6.672007535
224501_at 5.239643961
227347_x_at 5.027897683
205483_s_at 8.153587013
212283_at 5.079032635
212285_s_at 5.649745483

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612118_GP1531_23C_94_SS124068_HG-U133_Plus_2_HCHP-91622_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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